MSA-PAD 2.0

A web-based tool for multiple sequence alignment (MSA) of DNA. The algorithm uses PFAM or profiles provided by a user. The web interface requires registration and login.

Topic

Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs

Detail

  • Operation: Multiple sequence alignment

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: 2.0

  • Credit: The Italian nodes of Lifewatch and ELIXIR Research Infrastructure.

  • Input: FASTA

  • Output: -

  • Contact: http://recasgateway.cloud.ba.infn.it/web/guest/contact-and-feedback

  • Collection: -

  • Maturity: -

Publications

  • DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method.
  • Balech B, et al. DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method. DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method. 2018; 1746:173-180. doi: 10.1007/978-1-4939-7683-6_13
  • https://doi.org/10.1007/978-1-4939-7683-6_13
  • PMID: 29492894
  • PMC: -
  • SA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information.
  • Balech B, et al. MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information. MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information. 2015; 31:2571-3. doi: 10.1093/bioinformatics/btv141
  • https://doi.org/10.1093/bioinformatics/btv141
  • PMID: 25819080
  • PMC: -

Download and documentation

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